Evolutionary Biology
print


Breadcrumb Navigation


Content

Publications

For an updated overview of all publications consult the ORCID or GoogleScholar record.

SPECIATION

Experimental evolution of adaptive divergence under varying degrees of gene flow. Tusso S, Nieuwenhuis BPS, Weissensteiner B, Immler S, Wolf JBW (2020). Insight from a long-term evolutionary experiment on the role of gene flow on adaptive divergence. Nat Ecol Evol, in press.

Admixture mapping reveals the crow’s secret
Knief U, Bossu CM, Saino N et al. (2019) Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone. Nat Ecol Evol, 3: 570–576.

Genomic islands of differentiation in a multiple-population context
Vijay N*, Bossu CM*, Poelstra JW, Weissensteiner MH, Suh A, Kryukov AP, Wolf JBW (2016) Evolution of heterogenous genome differentiation across multiple contact zones in a crow species complex. Nat Commun, 7: 13195.

Interaction of socially transmitted hunting practice and population divergence
Foote A*, Vijay N*, Avila-Arcos M et al. (2016) Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nat Commun, 7: 11693.

EVOLUTIONARY ECOLOGY

Long- and short-term measures of population size contain information on conservation status
Peart CP*, Tusso S*, Pophaly SD* et al. (2020) Determinants of genetic variation across eco-evolutionary scales in pinnipeds. Nat Ecol Evol, 4:1095-1104

Rapid bio-diversification by shuffling genomes
Tusso S, Nieuwenhuis BPS, Sedlazeck FJ et al. (2019) Ancestral admixture is the main determinant of global biodiversity in fission yeast. Mol Biol Evol, 36: 1975–1989.

On the difficult decision of choosing the right configuration of your mating locus
Nieuwenhuis BPS*, Tusso S* et al. (2018) Repeated evolution of self-compatibility for reproductive assurance. Nat Commun, 9: 1639. 

MOLECULAR EVOLUTION

A large inventory of structural mutations and their relevance to speciation
Weissensteiner MH, Bunikis I, Catalán A et al. (2020) The population genomics of structural variation in a songbird genus, Nat Commun, 11:3403.

Support for the central tenet of nearly-neutral evolutionary theory
Kutschera VE, Poelstra JW, Botero-Castro F et al. (2020) Purifying selection in corvids Is less efficient on islands. Mol Biol Evol, 37: 469–474.

The dark matter of the genome matters
Weissensteiner MH, Pang AWC, Bunikis I et al. (2017) Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications. Genome Res, 27: 697–708.

METHODOLOGY

Time dependency of dN/dS after speciation
M
ugal CF, Kutschera VE, Botero-Castro F et al. (2020) Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio ω for Closely Related Species. Mol Biol Evol, 37: 260–279.

To what extent do bioinformatic pipelines bias biological reality?
Shafer ABA, Peart CR, Tusso S, Maayan I, Brelsford A, Wheat CW, Wolf JBW (2017) Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference. Methods Ecol Evol, 16: 940–950.

GBS goes ABC
Shafer ABA, Gattepaille LM, Stewart REA, Wolf JBW (2015) Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus. Mol Ecol, 24: 328–345.

REVIEW & OPINION

Relevance and empirical access to a central biological parameter
Peñalba JV & Wolf JBW (2020) From molecules to populations: appreciating and estimating recombination rate variation. Nat Rev Genet, 21: 476-492

Study design and interpretation of speciation genomic studies
Wolf JBW & Ellegren H (2016) Making sense of genomic islands of differentiation in light of speciation. Nat Rev Genet, 18: 87-100.

What may happen if we join genomics with tracking technology?
Shafer ABA, Northrup JM, Wikelski M et al. (2016) Forecasting Ecological Genomics: High-Tech Animal Instrumentation Meets High-Throughput Sequencing. PLoS Biol, 14: e1002350.

OLDER KEY PUBLICATIONS

Insight from Wik slott near Uppsala - thank you all for a nice workshop
Shafer ABA, Wolf JBW, Alves PC et al. (2015) Genomics and the challenging translation into conservation practice. Trends Ecol Evol, 30: 78–87. 

A comprehensive speciation genomic study in European crows
Poelstra JW*, Vijay N*, Bossu C* et al. (2014) The genomic landscape underlying phenotypic integrity in the face of gene flow in crows. Science, 344: 1410-1414.

Pervasive isolation-by-ecology pattern is consistent with ecologcial speciation theory
Shafer A & Wolf JBW (2013) Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology. Ecol Lett, 16: 940-950.

The genomic landscape of speciation: an avian example
Ellegren H, Smeds L, Burri R et al. (2012) The genomic landscape of species divergence in Ficedula flycatchers. Nature, 491: 756-760.