Files for Day 12

Exercise Files

FASTA alignment: align.fas

Illumina FASTQ Example: sample.fastq
Transcriptome FASTA Example: trans.fas
Mapping Output: map.sam (Short Example)
GFF Annotation: dmel.gff (Short Example)

Exercises and Solutions

Exercises

Scripts:
fasphy.pl
tcount.pl
filter.pl
gcount.pl

Output files:
PHYLIP alignment: align.phy

Transcript count: tcount.txt
Transcript-to-Gene file: t_to_g.txt
Gene count: gcount.txt